Prof Greg Slabaugh

Greg Slabaugh

Director of the Digital Environment Research Institute

Digital Environment Research Institute
Queen Mary University of London
ORCID Google Scholar LinkedIn

Research

Computer vision, Machine learning, Deep learning, Imaging

Underpinning Bioengineering, Cancer Models, Cardiovascular Models, Infectious Disease and Inflammation Models, Musculoskeletal Models

Interests

As a computer vision scientist, I am interested image analysis and its intersection with in vitro models. More broadly I'm interested in machine learning, particularly deep learning, as a method for building predictive models.

Publications

solid heart iconPublications of specific relevance to Predictive in vitro Models

2024

Clinical features, myocardial injury and systolic impairment in acute myocarditis.
Shyam-Sundar V, Slabaugh G, Mohiddin SA, Petersen SE and Aung N
Open Heart, Bmj vol. 11 (2), e002901-e002901.  
01-12-2024
RAVE: Residual Vector Embedding for CLIP-Guided Backlit Image Enhancement
Gaintseva T, Benning M and Slabaugh G
In Computer Vision – Eccv 2024, Springer Nature 412-428.  
02-11-2024
An in-silico comparison of anatomical and substrate based AF ablation using electro and optical flow mapping
Jaffery OA, Zolotarev A, Barera CE, Rodero C, Niederer S, Slabaugh G, Good WW and Roney CH
European Heart Journal, Oxford University Press (Oup) vol. 45 (Supplement_1), ehae666.579-ehae666.579.  
28-10-2024
Artificial intelligence in respiratory care: perspectives on critical opportunities and challenges
Drummond D, Adejumo I, Hansen K, Poberezhets V, Slabaugh G and Hui CY
Breathe, European Respiratory Society (Ers) vol. 20 (3) 
01-10-2024
POLYCORE: Polygon-based contour refinement for improved Intravascular Ultrasound Segmentation
Bransby KM, Bajaj R, Ramasamy A, Çap M, Yap N, Slabaugh G, Bourantas C and Zhang Q
Computers in Biology and Medicine, Elsevier vol. 182, 109162-109162.  
20-09-2024
Imaging for the diagnosis of acute myocarditis: can artificial intelligence improve diagnostic performance?
Shyam-Sundar V, Harding D, Khan A, Abdulkareem M, Slabaugh G, Mohiddin SA, Petersen SE and Aung N
Frontiers in Cardiovascular Medicine, Frontiers vol. 11 
29-08-2024
Management of acute myocarditis: a systematic review of clinical practice guidelines and recommendations
Shyam-Sundar V, Mahmood A, Slabaugh G, Chahal A, Petersen SE, Aung N, Mohiddin SA and Khanji MY
European Heart Journal - Quality of Care and Clinical Outcomes, Oxford University Press (Oup), qcae069-qcae069.  
23-08-2024
Cell-vision fusion: A Swin transformer-based approach for predicting kinase inhibitor mechanism of action from Cell Painting data
Dee W, Sequeira I, Lobley A and Slabaugh G
Iscience, Elsevier vol. 27 (8), 110511-110511.  
01-08-2024
Quality control of cardiac magnetic resonance imaging segmentation, feature tracking, aortic flow, and native T1 analysis using automated batch processing in the UK Biobank study
Chadalavada S, Rauseo E, Salih A, Naderi H, Khanji M, Vargas JD, Lee AM, Amir-Kalili A, Lockhart L, Graham B, Chirvasa M, Fung K, Paiva J, Sanghvi MM, Slabaugh GG, Jensen MT, Aung N and Petersen SE
European Heart Journal - Imaging Methods and Practice, Oxford University Press (Oup) vol. 2 (3) 
25-07-2024
Partial Advantage Estimator for Proximal Policy Optimization
Jin Y, Song X, Slabaugh G and Lucas S
Ieee Transactions On Games, Institute of Electrical and Electronics Engineers (Ieee) vol. PP (99), 1-10.  
03-06-2024
FOAA: Flattened Outer Arithmetic Attention for Multimodal Tumor Classification
Alwazzan O, Patras I and Slabaugh G
International Symposium On Biomedical Imaging, Institute of Electrical and Electronics Engineers (Ieee) vol. 00, 1-5.  
30-05-2024
Non-calcified plaque-based coronary stenosis grading in contrast enhanced CT
Jawaid MM, Narejo S, Riaz F, Reyes-Aldasoro CC, Slabaugh G and Brown J
Medical Engineering & Physics, Elsevier vol. 129 
22-05-2024
A Review of Personalised Cardiac Computational Modelling Using Electroanatomical Mapping Data
Jaffery OA, Melki L, Slabaugh G, Good WW and Roney CH
Arrhythmia & Electrophysiology Review, Radcliffe Cardiology vol. 13 
20-05-2024
Molecular graph transformer: stepping beyond ALIGNN into long-range interactions
Anselmi M, Slabaugh G, Crespo-Otero R and Di Tommaso D
Digital Discovery, Royal Society of Chemistry (Rsc) vol. 3 (5), 1048-1057.  
23-04-2024
Non-local degradation modeling for spatially adaptive single image super-resolution
Zhang Q, Zheng B, Li Z, Liu Y, Zhu Z, Slabaugh G and Yuan S
Neural Networks, Elsevier vol. 175, 106293-106293.  
10-04-2024
GoLDFormer: A global–local deformable window transformer for efficient image restoration
Chen Q, Zheng B, Yan C, Zhu Z, Wang T, Slabaugh G and Yuan S
Journal of Visual Communication and Image Representation, Elsevier vol. 100, 104117-104117.  
01-04-2024
Graph neural networks in vision-language image understanding: a survey
Senior H, Slabaugh G, Yuan S and Rossi L
The Visual Computer, Springer Science and Business Media Llc 
29-03-2024
Prediction of atrial fibrillation and stroke using machine learning models in UK Biobank
Papadopoulou A, Harding D, Slabaugh G, Marouli E and Deloukas P
Heliyon, Elsevier vol. 10 (7) 
17-03-2024
Misclassification Loss for Segmentation of the Aortic Vessel Tree
Khan A, Asad M, Zolotarev A, Roney C, Mathur A, Benning M and Slabaugh G
In Segmentation of The Aorta. Towards The Automatic Segmentation, Modeling, and Meshing of The Aortic Vessel Tree From Multicenter, Springer Nature 67-79.  
01-01-2024

2023

Applications of machine and deep learning to thyroid cytology and histopathology: a review
Slabaugh G, Beltran L, Rizvi H, Deloukas P and Marouli E
Frontiers in Oncology, Frontiers vol. 13 
07-11-2023
Phenotyping left ventricular systolic dysfunction in asymptomatic individuals for improved risk stratification
Rauseo E, Abdulkareem M, Khan A, Cooper J, Lee AM, Aung N, Slabaugh GG and Petersen SE
European Heart Journal - Cardiovascular Imaging, Oxford University Press (Oup) vol. 24 (10), 1363-1373.  
12-09-2023
Ischemic Heart Disease and Vascular Risk Factors Are Associated With Accelerated Brain Aging
Rauseo E, Salih A, Raisi-Estabragh Z, Aung N, Khanderia N, Slabaugh GG, Marshall CR, Neubauer S, Radeva P, Galazzo IB, Menegaz G and Petersen SE
Jacc Cardiovascular Imaging, Elsevier vol. 16 (7), 905-915.  
12-04-2023
Vector Quantized Semantic Communication System
Fu Q, Xie H, Qin Z, Slabaugh G and Tao X
Ieee Wireless Communications Letters, Institute of Electrical and Electronics Engineers, 1-1.  
10-03-2023
Machine learning and disease prediction in obstetrics
Arain Z, Iliodromiti S, Slabaugh G, David AL and Chowdhury TT
Current Research in Physiology, Elsevier vol. 6 
01-01-2023
Sequential Segmentation of the Left Atrium and Atrial Scars Using a Multi-scale Weight Sharing Network and Boundary-Based Processing
Khan A, Alwazzan O, Benning M and Slabaugh G
In Left Atrial and Scar Quantification and Segmentation, Springer Nature 69-82.  
01-01-2023
Joint Dense-Point Representation for Contour-Aware Graph Segmentation
Bransby KM, Slabaugh G, Bourantas C and Zhang Q
In Medical Image Computing and Computer Assisted Intervention – Miccai 2023, Springer Nature 519-528.  
01-01-2023

2022

Learning Frequency Domain Priors for Image Demoireing
Zheng B, Yuan S, Yan C, Tian X, Zhang J, Sun Y, Liu L, Leonardis A and Slabaugh G
Ieee Transactions On Pattern Analysis and Machine Intelligence, Institute of Electrical and Electronics Engineers (Ieee) vol. 44 (11), 7705-7717.  
04-10-2022
FlexHDR: Modelling Alignment and Exposure Uncertainties for Flexible HDR Imaging
Catley-Chandar S, Tanay T, Vandroux L, Leonardis A, Slabaugh G and Perez-Pellitero E
Ieee Transactions On Image Processing, Institute of Electrical and Electronics Engineers 
08-09-2022
Constrained Predictive Filters for Single Image Bokeh Rendering
Zheng B, Chen Q, Yuan S, Zhou X, Zhang H, Zhang J, Yan C and Slabaugh G
Ieee Transactions On Computational Imaging, Institute of Electrical and Electronics Engineers (Ieee) vol. 8, 346-357.  
03-05-2022
Diagnosing and Preventing Instabilities in Recurrent Video Processing
Tanay T, Sootla A, Maggioni M, Dokania PK, Torr PHS, Leonardis A and Slabaugh G
Ieee Transactions On Pattern Analysis and Machine Intelligence, Institute of Electrical and Electronics Engineers 
17-03-2022
Bidirectional difference locating and semantic consistency reasoning for change captioning
Sun Y, Li L, Yao T, Lu T, Zheng B, Yan C, Zhang H, Bao Y, Ding G and Slabaugh G
International Journal of Intelligent Systems, Wiley vol. 37 (5), 2969-2987.  
19-01-2022

2021

CBREN: Convolutional Neural Networks for Constant Bit Rate Video Quality Enhancement
Zhao H, Zheng B, Yuan S, Zhang H, Yan C, Li L and Slabaugh G
Ieee Transactions On Circuits and Systems For Video Technology, Institute of Electrical and Electronics Engineers (Ieee) vol. 32 (7), 4138-4149.  
27-10-2021

2018

Left Atrial Scarring Segmentation from Delayed-Enhancement Cardiac MRI Images: A Deep Learning Approach
Yang G, Zhuang X, Khan H, Nyktari E, Haldar S, Li L, Wage R, Ye X, Slabaugh G, Mohiaddin R, Wong T, Keegan J and Firmin D
In Cardiovascular Imaging and Image Analysis, Taylor & Francis 109-130.  
03-10-2018
Fully automatic segmentation and objective assessment of atrial scars for long‐standing persistent atrial fibrillation patients using late gadolinium‐enhanced MRI
Yang G, Zhuang X, Khan H, Haldar S, Nyktari E, Li L, Wage R, Ye X, Slabaugh G, Mohiaddin R, Wong T, Keegan J and Firmin D
Medical Physics, Wiley vol. 45 (4), 1562-1576.  
15-03-2018

2013

CT Colonography: External Clinical Validation of an Algorithm for Computer-assisted Prone and Supine Registration
Boone DJ, Halligan S, Roth HR, Hampshire TE, Helbren E, Slabaugh GG, McQuillan J, McClelland JR, Hu M, Punwani S, Taylor SA and Hawkes DJ
Radiology, Radiological Society of North America (Rsna) vol. 268 (3), 752-760.  
17-05-2013

2009

Shape-Based Computer-Aided Detection of Lung Nodules in Thoracic CT Images
Ye X, Lin X, Dehmeshki J, Slabaugh G and Beddoe G
Biomedical Engineering, Ieee Transactions On, Ieee vol. 56, 1810-1820.  
01-07-2009

Grants

solid heart iconGrants of specific relevance to Predictive in vitro Models
bullet iconDevelopment and Validation of Smartphone-Based Tools for Characterisation of Gait - QMUL-HUMA KTP
Caroline Roney, Zion Tse, Dylan Morrissey, Stuart Miller, Trevor Prior and Greg Slabaugh
£227,485 Innovate UK
01-08-2024 - 31-07-2026
bullet iconAddressing socio-technical limitations of LLMs for medical and social computing
Maria Liakata, Julia Ive, Matthew Purver, Michael Schlichtkrull, Claude Chelala and Greg Slabaugh
£1,799,332 EPSRC Engineering and Physical Sciences Research Council
01-05-2024 - 31-03-2028
bullet iconBBSRC CTP Studentship: Nasim Mohamed Ismail Studentship - MSD
Greg Slabaugh and Emma Tjong
£10,400 Merck
01-10-2023 - 30-09-2027
bullet iconEPSRC DTP Case Conversion - Industry Contribution: Senadeera Damith
Greg Slabaugh
£35,668 Remark AI Remark AI UK Limited
01-10-2023 - 30-09-2027
bullet iconMultimodal AI for Multi-omics Data Integration (N. M. Ismail)
Greg Slabaugh
£125,917 BBSRC Biotechnology and Biological Sciences Research Council
01-10-2023 - 30-09-2027
bullet iconDeveloping Spatially Resolved Molecular Drug-Repurposing Assays for Treating Age-Related Frailty
James Timmons, Peter McCormick and Greg Slabaugh
£331,647 MRC Medical Research Council
30-09-2023 - 29-09-2025
bullet iconRe-profiled BRC 2022-27 Final - Precision Digital Health, Cardiovascular Devices and Trials
John Whiteley and Greg Slabaugh
£3,519,133 NIHR National Institute for Health Research
01-12-2022 - 30-11-2027
bullet iconPrecision Musculoskeletal Care
John Whiteley, Costantino Pitzalis, Martin Knight, Greg Slabaugh and Xavier Griffin
£3,343,542 NIHR National Institute for Health Research
01-12-2022 - 30-11-2027
bullet iconInnovate UK KTP - Wise
Alexander Shestopaloff and Greg Slabaugh
£219,928 Innovate UK
01-11-2022 - 30-11-2025
bullet iconCTP Training Grant: William Dee
Greg Slabaugh
£123,829 BBSRC Biotechnology and Biological Sciences Research Council
01-10-2022 - 30-09-2026
bullet iconBBSRC AIDD CTP CASE Award: William Dee
Greg Slabaugh
£8,600 EXSCIENTIA LIMITED
26-09-2022 - 25-09-2026


bullet iconDevelopment of Multimodal Data Integration Algorithms
Greg Slabaugh
£39,052 AZ AstraZeneca UK Limited
15-01-2024 - 15-08-2024
bullet iconKTP Capacity Building Competition 2022
Akram Alomainy, Greg Slabaugh, Alastair Noyce, Vahitha Abdul Salam and Viji Draviam Sastry
£34,544 Innovate UK
01-12-2022 - 31-03-2023
bullet iconKTP Capacity Enhancement: AKT2I with Keen-AI
Greg Slabaugh
£34,708 Innovate UK
01-12-2022 - 31-03-2023